PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400012281
Common NameLOC102604650
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 444aa    MW: 48677.2 Da    PI: 6.6613
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400012281genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.47.2e-29207265259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           +Dg++WrKYGqK  +g+++prsYYrC+ a  Cpv+k+v+r+ ed +++++tYeg+Hnh+
  PGSC0003DMP400012281 207 NDGCQWRKYGQKISRGNPCPRSYYRCSVApLCPVRKQVQRCLEDMSILITTYEGTHNHS 265
                           8***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-30191267IPR003657WRKY domain
SuperFamilySSF1182901.09E-25198267IPR003657WRKY domain
PROSITE profilePS5081127.267201267IPR003657WRKY domain
SMARTSM007743.1E-34206266IPR003657WRKY domain
PfamPF031061.8E-25207264IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MEKKLDNSIS RANNHEEEDI KKALKDDEFK SAIAEVNEIK LENARLKLLL QQIEKDYTSL  60
QTRFFNICQP DLKKSGSPTC THENIADEEE SELVSLRLGR SPSPSESKKV DKKRSYDKTI  120
EDYPSCDGQS NDGLKLGLDY STRISEPDLI KPSNDPTPGP TSEVVKTVKR CDDESVKKDA  180
GDDEVSQPNV KRARVSVRTK CDYPTINDGC QWRKYGQKIS RGNPCPRSYY RCSVAPLCPV  240
RKQVQRCLED MSILITTYEG THNHSLPIEA TAMASTTSAA ASMLLSGSST SSKNFPNLPN  300
ISKTTPLYLS NSSSNPFPTI TLDFTTFPTT SSFTSFNFPS NFQSGSGFLS NSLSFSSPES  360
TTMTKILGNG GLNYDSTSTL PYHNNLINIG SSQKQFDTSS NKLKEDSSQQ ALTETLTKAI  420
TSDPSFQSVL AAAISSMVGA TKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-22193267174WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166170TVKRC
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357198.10.0PREDICTED: probable WRKY transcription factor 72
TrEMBLM1A9L50.0M1A9L5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000178590.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128051921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.19e-60WRKY DNA-binding protein 72
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]